Update: during this week Thisisu had upgraded more times his software (JRT) and with the last version we don't have the same problem i had noted in the other post, now the situation involve both d7II and dsupportsuite.
Now d7II and dsupportsuite are killed by jrt!
I've spent many of my time to find a solution because i use frequently jrt, both in d7II and in dsupportsuite and finally i found that jrt use a whitelist for the processes to kill
Best solution will be to contact Thisisu and tell him to insert d7II and dsupportsuite in the whitelist (i think Nick or other members of the staff can do this if they have the contact of the author of jrt)
My solution: i've created a new app that everytime download from my server the file wl_processes.cfg (edited with d7II and dsupportsuite in it), i've edited jrt_auto.cmd to copy the file in %temp%/jrt and then all works fine.
If someone of you have a best solution and want to share i'll be happy to read